Package: survML 1.1.0.9000
survML: Tools for Flexible Survival Analysis Using Machine Learning
Statistical tools for analyzing time-to-event data using machine learning. Implements survival stacking for conditional survival estimation, isotonic regression for current status data, and methods for algorithm-agnostic variable importance. See Wolock CJ, Gilbert PB, Simon N, and Carone M (2024) <doi:10.1080/10618600.2024.2304070>.
Authors:
survML_1.1.0.9000.tar.gz
survML_1.1.0.9000.zip(r-4.5)survML_1.1.0.9000.zip(r-4.4)survML_1.1.0.9000.zip(r-4.3)
survML_1.1.0.9000.tgz(r-4.4-any)survML_1.1.0.9000.tgz(r-4.3-any)
survML_1.1.0.9000.tar.gz(r-4.5-noble)survML_1.1.0.9000.tar.gz(r-4.4-noble)
survML_1.1.0.9000.tgz(r-4.4-emscripten)survML_1.1.0.9000.tgz(r-4.3-emscripten)
survML.pdf |survML.html✨
survML/json (API)
NEWS
# Install 'survML' in R: |
install.packages('survML', repos = c('https://cwolock.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cwolock/survml/issues
Last updated 12 days agofrom:1bf52172b8. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 10 2024 |
R-4.5-win | WARNING | Sep 10 2024 |
R-4.5-linux | WARNING | Sep 10 2024 |
R-4.4-win | WARNING | Sep 10 2024 |
R-4.4-mac | WARNING | Sep 10 2024 |
R-4.3-win | WARNING | Sep 10 2024 |
R-4.3-mac | WARNING | Sep 10 2024 |
Exports:crossfit_oracle_predscrossfit_surv_predscurrstatCIRDR_pseudo_outcome_regressionstackGstackLvim_accuracyvim_AUCvim_briervim_cindexvim_rmst_msevim_rsquared
Dependencies:abindassertthatbitopscaToolsChernoffDistclicodetoolscolorspacecpp11cvAUCdata.tabledigestdplyrfansifarverfdrtoolforeachfurrrfuturefuture.applygamgenericsggplot2glmnetglobalsgluegplotsgslgtablegtoolshal9001haldensifyIsoisobanditeratorsKernSmoothlabelinglatticelifecyclelistenvmagrittrMASSMatrixmatrixStatsmgcvmunsellnlmennlsorigamiparallellypillarpkgconfigpurrrR6rbibutilsRColorBrewerRcppRcppEigenRdpackrlangROCRrsamplescalesshapesliderstringistringrSuperLearnersurvivaltibbletidyrtidyselectutf8vctrsviridisLitewarpwithr
Assessing variable importance in survival analysis using machine learning
Rendered fromvariable-importance.Rmd
usingknitr::rmarkdown
on Sep 10 2024.Last update: 2024-08-11
Started: 2024-08-04
Estimating a conditional survival function using off-the-shelf machine learning tools
Rendered fromconditional_survival.Rmd
usingknitr::rmarkdown
on Sep 10 2024.Last update: 2024-08-04
Started: 2024-05-21
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Generate K-fold cross-fit survival predictions for downstream use | crossfit_oracle_preds |
Generate K-fold cross-fit survival predictions for downstream use | crossfit_surv_preds |
Estimate a survival function under current status sampling | currstatCIR |
Generate K-fold cross-fit survival predictions for downstream use | DR_pseudo_outcome_regression |
Estimate a conditional survival function using global survival stacking | stackG |
Estimate a conditional survival function via local survival stacking | stackL |
Estimate classification accuracy VIM | vim_accuracy |
Estimate AUC VIM | vim_AUC |
Estimate Brier score VIM | vim_brier |
Estimate concordance index VIM | vim_cindex |
Estimate restricted prediction time MSE VIM | vim_rmst_mse |
Estimate Brier score VIM | vim_rsquared |